PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 919218
Common NameARALYDRAFT_919218
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 163aa    MW: 17415.2 Da    PI: 10.3469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
919218genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001982104123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++Cp+Cg  F+    L  H+r+H
   919218  82 HPCPICGVEFPMGQALGGHMRRH 104
              78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-637104No hitNo description
PfamPF139128.0E-123863IPR007087Zinc finger, C2H2
SMARTSM003552.13961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9543966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM003550.07982104IPR015880Zinc finger, C2H2-like
PfamPF139122.4E-1182105IPR007087Zinc finger, C2H2
PROSITE profilePS501579.68182109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MVARSDIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFR CKTCLKEFHS FQALGGHRAS  60
HKKPNNDTLS SGLVKKVKTT SHPCPICGVE FPMGQALGGH MRRHRNESGA GGGALVTRAL  120
LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154750.0AB015475.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10.
GenBankAY0509150.0AY050915.1 Arabidopsis thaliana putative zinc finger protein Zat12 (At5g59820) mRNA, complete cds.
GenBankAY1338180.0AY133818.1 Arabidopsis thaliana clone U11346 putative zinc finger protein Zat12 (At5g59820) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankX986730.0X98673.1 A.thaliana mRNA for ZAT12 protein.
GenBankX986740.0X98674.1 A.thaliana zat12 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002864652.11e-116hypothetical protein ARALYDRAFT_919218
SwissprotQ424101e-113ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLD7MT321e-116D7MT32_ARALL; Putative uncharacterized protein
STRINGscaffold_802618.11e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.11e-114C2H2 family protein